![]() To support this analysis, the Advaita knowledgebase was expanded (to v1910) to include 170,997 chemicals and 774,553 chemical-to-gene regulatory interactions. This analysis compares chemical-to-gene regulatory interactions with patterns of downstream gene expression to find chemicals with large numbers of consistent downstream DE genes. Predicted Upstream Chemical Analysis allows you to predict chemicals, drugs, and toxicants that might be present (overly-abundant) or absent (insufficient) in your experiment. New Module: Upstream Chemicals, Drugs, and Toxicants To access these new capabilities for older analyses, please update the analysis using the button found in report information, “Re-run as new analysis.” NEW CAPABILITIES: Available in newly created or updated analyses Other features, including the two new capabilities, are only available in analyses generated after the update was released. As with all iPathwayGuide releases, many of the improvements are available in older analyses. On January 31, 2020, Advaita released a major update to its platform, with two brand new capabilities and three major improvements, now available in iPathwayGuide. That will greatly increase the visibility of your research. once the paper is published, if you let us know, we may be able to highlight your research in a short piece that we can send to our mailing list. ![]() Please let us know if you want us to show you how to do this. Some figures can be customized for colors, as well. many figures can be customized in terms of content, order, etc.we are here to help if you need any help with the Methods section or even if you have any questions from the reviewers about anything to do with our analysis.I would like to take this opportunity to remind you a couple of things: Just mentioning the software in the Methods would not be sufficient since it would not be clear what figures where produced with it. We would kindly ask that you either maintain the “(c) Advaita Corporation 2022” in the figure, or mention in the caption something like “Figure obtained with iPathwayGuide (AdvaitaBio)”. The software is meant to create figures and give you results that can be directly published so you can save time and be more productive. Of course, you are allowed to publish any and all figures from our software.
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